Couldn't get gwt deployed with eclipse, so trying netbeans. Couldn't add my (already-installed) tomcat to netbeans so wiped the lot - tomcat and netbeans - and started over.
Re-installation of netbeans, got same GTK reports as first attempt:
Of course, once I RTFM, I see that tomcat doesn't go in by default, you have to customize the installation, so re-installed again. Now I see that glassfish has swiped the 8080 port, no mention of where tomcat will sit [8084 iirc].
slm@fuji:/downloads/netbeans$ ./netbeans-6.5-ml-linux.sh
Configuring the installer...
Searching for JVM on the system...
Extracting installation data...
Running the installer wizard...
(:9282): Gtk-WARNING **: Attempting to add a widget with type GtkButton to a GtkComboBoxEntry (need an instance of GtkEntry or of a subclass)
(:9282): Gtk-CRITICAL **: gtk_widget_realize: assertion `GTK_WIDGET_ANCHORED (widget) || GTK_IS_INVISIBLE (widget)' failed
(:9282): Gtk-CRITICAL **: gtk_paint_box: assertion `style->depth == gdk_drawable_get_depth (window)' failed
(:9282): Gtk-CRITICAL **: gtk_paint_box: assertion `style->depth == gdk_drawable_get_depth (window)' failed
slm@fuji:/downloads/netbeans$
Having shut down netbeans, tomcat is no longer running. Re-installation of tomcat using Synaptic - no manager, examples or docs :(